PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim02g072060.0.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family HSF
Protein Properties Length: 340aa    MW: 38413.1 Da    PI: 7.9591
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim02g072060.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind87.22.2e-27401302101
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl k+ye+++d+e++ l++w++++++f+++d+++f  +vLpkyFkhsn++SF+ QLn Y F+kv + +          e+ +++F++gkk+
  Sopim02g072060.0.1  40 FLVKTYEMVDDPETDPLVHWTSSKTTFLITDPNKFCVEVLPKYFKHSNLSSFIYQLNNYRFRKVCSYK---------CEYGNPWFRAGKKH 121
                         9****************************************************************999.........67************ PP

                         XXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkk 101
                          l++ik + 
  Sopim02g072060.0.1 122 WLKNIKSRI 130
                         ******986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.1E-2934124IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.31E-2935128IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.6E-3736129IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.5E-164063IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004477.1E-2540128IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.5E-167890IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.5E-1691103IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MEINIQENGG KGGRGRRGGG AVGRGRPRLT GLRGNSPPPF LVKTYEMVDD PETDPLVHWT  60
SSKTTFLITD PNKFCVEVLP KYFKHSNLSS FIYQLNNYRF RKVCSYKCEY GNPWFRAGKK  120
HWLKNIKSRI QLSKENNTQQ GSHSPRVDLV SNNLEEELEK LRNDHISLRV ELQKLKDGQE  180
NMRSFFPMLP GCGKEKEIRN IMKLLLEKSE VRGDSSSDDT TKRTRLVESP DRVAGSVQDG  240
IGQTSNSAGG SVSSNEKQKE EATARNAKNR EFWEKLFEDE SESKNEGAEE SEQELNRLKA  300
MAKIEEMVES KIAMEGESLI AKAAASLNDE TEAYLQLWT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B7e-213813027130Heat shock factor protein 1
5d5v_B7e-213813027130Heat shock factor protein 1
5d5v_D7e-213813027130Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11119GGRGRRGGG
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2265210.0AC226521.1 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02SLm0096H01, complete sequence.
GenBankHG9755140.0HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015064815.10.0PREDICTED: heat stress transcription factor A-7a-like
TrEMBLK4B8I10.0K4B8I1_SOLLC; Uncharacterized protein
STRINGSolyc02g072060.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA129701518
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.11e-39heat shock transcription factor A2